jmotif - Time Series Analysis Toolkit Based on Symbolic Aggregate Discretization, i.e. SAX
Implements time series z-normalization, SAX, HOT-SAX, VSM, SAX-VSM, RePair, and RRA algorithms facilitating time series motif (i.e., recurrent pattern), discord (i.e., anomaly), and characteristic pattern discovery along with interpretable time series classification.
Last updated 2 years ago
anomalydiscoverydiscorddiscretizationkddsaxsax-vsmtimeseriescpp
5.12 score 55 stars 48 scripts 215 downloadsMetaComp - EDGE Taxonomy Assignments Visualization
Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.
Last updated 7 years ago
bioinformaticscomparative-genomicsedgeheatmapmetagenomicsvisualization
3.60 score 4 stars 7 scripts 253 downloads